Planktonic foraminifera from the eastern Indian Ocean: distribution and ecology in relation to the Western Pacific Warm Pool (WPWP)

Faunal assemblages, principal component (PCA), canonical correspondence (CCA), and factor analysis are applied to planktonic foraminifera from 57 core-top samples from the eastern Indian Ocean. The foraminiferal lysocline occurs at 2400 m north of 15°S where carbonate dissolution is induced by the Java upwelling system, and occurs deeper south of 15°S where carbonate dissolution is characteristic of the oligotrophic regions in the Indian Ocean. Dissolution effects, the February standing stock at the time of collection of the plankton-tow material, and different production rates explain the different foraminiferal assemblages found between plankton-tow and core-top samples. Core-top samples are differentiated by PCA into four groups — Upwelling, Western Pacific Warm Pool (WPWP), Transitional, and Southern — that are related to environmental variables (temperature, salinity and nutrients); all environmental variables follow a strong latitudinal component as indicated by the CCA analysis. Similarly, three assemblages are recognized by factor analysis: Factor 1 (dominated by Globigerinoides sacculifer, G. ruber, Globigerinita glutinata and Globorotalia cultrata), factor 2 (dominated by Globigerina bulloides and Globorotalia inflata) and factor 3 (dominated by Neogloboquadrina dutertrei) explain more than 92% of the variance, and are related to sea-surface temperature, thermocline depth and nutrient levels. The seasonal influence of the Java upwelling system supplies nutrients, phyto- and zooplankton to the oligotrophic eastern Indian Ocean (factor 1). South of 24°S, a deep chlorophyll maximum, a deep euphotic zone, a deep thermocline, SSTs below 22°C, and brief upwelling pulses seem to explain factors 2 and 3. The ratio of G. sacculifer and N. dutertrei, two mutually excluding species, appears to indicate the southern boundary of the WPWP. This ratio is applied to core Fr10/95-11 to demonstrate past shifts of the southern boundary of the WPWP.     

Planktonic rotifers and temperature

The influence of temperature (t) upon rotifer embryonic development rate (D_e) has been analysed using data from the literature, and the author's own results from experimental and natural populations. For Keratella cochlearis (Gosse), within the temperature range of 1–28°C, this relationship is best expressed by the equation: 1/D_e = 0.002 + 0.00025t + 0.000065t².For Brachionus calyciflorus Pallas, between 8°C and 35°C, the best relationship is given by the equation: 1/D_e = 0.005 + 0.00013t + 0.00013t².Increasing the incubation temperature to 37–40°C resulted in a decrease in development rate and a sharp reduction in life length.Analysis of the relationship between respiration rate and temperature in experimental and natural populations of Brachionus calyciflorus and Hexarthra mira (Hudson) showed that the maximum rate of oxygen consumption occurred at 32–33°C.The effects of temperature upon the ingestion rates of rotifers is greatly influenced by food concentration. Consequently, this factor also influences the secondary production of experimental populations at different temperatures.     

Hydrology and Diatom Phytoplankton of High Arctic Lakes and Ponds on Store Koldewey,Northeast Greenland

We document hydrological and phytoplankton characteristics of nine lakes and two ponds on Store Koldewey, a culturally undisturbed island off Northeast Greenland. The limnological survey included the recording of temperature, conductivity, oxygen concentration and saturation, pH, ionic composition, transparency, and the diatom phytoplankton community. In summer 2003, the lakes were cold, monomictic, thermally unstratified, alkaline and likely oligotrophic water bodies. Diatom phytoplankton was present in six lakes and consisted of four dominant species (Aulacoseira tethera, Cyclotella pseudostelligera, C. rossii, and Fragilaria tenera). The concentration of planktonic diatoms varied distinctly between the lakes. (© 2005 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

2010年两个航次獐子岛海域浮游纤毛虫丰度和生物量

2010年7、8月在北黄海獐子岛海域进行了浮游纤毛虫丰度和生物量的调查。7月浮游纤毛虫的平均丰度为(5107±4451) 个/L,平均生物量为(10.17±9.06) μg C/L。8月浮游纤毛虫的平均丰度为(7894±7212) 个/L,平均生物量为(15.24±18.49) μg C/L。7月表层浮游纤毛虫丰度和生物量均呈现近岸多、远岸少的趋势。8月Y1-3、Y2-5两个站表层纤毛虫丰度较高,Y2-5、Y1-1两个站表层纤毛虫生物量较高。7月STA断面浮游纤毛虫丰度呈现表层或次表层高、底层低的特点。8月STA、Y1断面纤毛虫丰度在表层或次表层高、底层低,而Y2断面纤毛虫垂直分布较一致。7月纤毛虫水体丰度及生物量在近岸较远岸高, 8月纤毛虫水体丰度及生物量在离岛较近的Y2-5、Y1-1两站较高。7、8月航次中分别鉴定出砂壳纤毛虫17和21种,其中拟铃虫属(Tintinnopsis)种数最多,Tintinnopsis corniger Hada, 1964为中国海区的新记录种。7、8月砂壳纤毛虫丰度占纤毛虫总丰度的平均比例分别为(19.0±21.6)%和(13.0±16.1)%;7、8月砂壳纤毛虫生物量占纤毛虫总生物量的平均比例分别为(58.2±33.0)%和(42.6±33.2)%。7、8月两个航次中小型无壳纤毛虫在无壳纤毛虫丰度中均占绝对优势。     

The temporal and spatial distribution of planktonic and benthic protozoan communities in a small productive lake

An investigation into the spatial and temporal distribution of protozoa in Esthwaite Water, a small eutrophic lake in the English Lake District, was carried out from mid-June until late September, 1977, during the period of summer stratification. Quantitative analyses of planktonic protozoan populations were performed on water samples collected at 1 m intervals throughout the water column and individual depth-time distribution profiles were constructed for the major ciliate species. Population density and species succession of the benthic protozoa was also studied.     

Towards a morphological metric of assemblage dynamics in the fossil record: a test case using planktonic foraminifera

With a glance, even the novice naturalist can tell you something about the ecology of a given ecosystem. This is because the morphology of individuals reflects their evolutionary history and ecology, and imparts a distinct ‘look’ to communities—making it possible to immediately discern between deserts and forests, or coral reefs and abyssal plains. Once quantified, morphology can provide a common metric for characterizing communities across space and time and, if measured rapidly, serve as a powerful tool for quantifying biotic dynamics. Here, we present and test a new high-throughput approach for analysing community shape in the fossil record using semi-three-dimensional (3D) morphometrics from vertically stacked images (light microscopic or photogrammetric). We assess the potential informativeness of community morphology in a first analysis of the relationship between 3D morphology, ecology and phylogeny in 16 extant species of planktonic foraminifera—an abundant group in the marine fossil record—and in a preliminary comparison of four assemblages from the North Atlantic. In the species examined, phylogenetic relatedness was most closely correlated with ecology, with all three ecological traits examined (depth habitat, symbiont ecology and biogeography) showing significant phylogenetic signal. By contrast, morphological trees (based on 3D shape similarity) were relatively distantly related to both ecology and phylogeny. Although improvements are needed to realize the full utility of community morphometrics, our approach already provides robust volumetric measurements of assemblage size, a key ecological characteristic.     

Climate-driven genetic divergence of limpets with different life histories across a southeast African marine biogeographic disjunction: different processes, same outcome

Genetic divergence among populations of marine broadcast spawners in the absence of past geological barriers presents an intriguing challenge to understanding speciation in the sea. To determine how differences in life history affect genetic divergence and demographic histories across incomplete dispersal barriers, we conducted a comparative phylogeographic study of three intertidal limpets (Siphonaria spp.) represented on either side of a biogeographic disjunction separating tropical and subtropical marine provinces in southeastern Africa. Using a combination of mitochondrial and nuclear sequence data, we identified two distinct evolutionary lineages each in both Siphonaria concinna (a planktonic disperser) and S. nigerrima (a direct developer), and panmixia in a second planktonic disperser, S. capensis. Although phylogeographic breaks were present in two species, how these became established differed depending on their life histories. In the direct developer, lack of gene flow following divergence, and demographic expansion from a small initial size in the species' subtropical population, point to a single colonisation event. In contrast, the evolutionary lineages of the planktonic disperser split into two genetic lineages with much larger initial population sizes and southward gene flow continued at least periodically, indicating that divergence in this species may have been driven by a combination of reduced larval dispersal and divergent selection. These findings help explain why the presence or absence of phylogeographic breaks often appears to be independent of species' dispersal potential.     

Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea

The extent of horizontal gene transfer (HGT) among marine pelagic prokaryotes and the role that HGT may have played in their adaptation to this particular environment remain open questions. This is partly due to the paucity of cultured species and genomic information for many widespread groups of marine bacteria and archaea. Molecular studies have revealed a large diversity and relative abundance of marine planktonic archaea, in particular of Thaumarchaeota (also known as group I Crenarchaeota) and Euryarchaeota of groups II and III, but only one species (the thaumarchaeote Candidatus Nitrosopumilus maritimus) has been isolated in pure culture so far. Therefore, metagenomics remains the most powerful approach to study these environmental groups. To investigate the impact of HGT in marine archaea, we carried out detailed phylogenetic analyses of all open reading frames of 21 archaeal 16S rRNA gene-containing fosmids and, to extend our analysis to other genomic regions, also of fosmid-end sequences of 12 774 fosmids from three different deep-sea locations (South Atlantic and Adriatic Sea at 1000 m depth, and Ionian Sea at 3000 m depth). We found high HGT rates in both marine planktonic Thaumarchaeota and Euryarchaeota, with remarkable converging values estimated from complete-fosmid and fosmid-end sequence analysis (25 and 21% of the genes, respectively). Most HGTs came from bacterial donors (mainly from Proteobacteria, Firmicutes and Chloroflexi) but also from other archaea and eukaryotes. Phylogenetic analyses showed that in most cases HGTs are shared by several representatives of the studied groups, implying that they are ancient and have been conserved over relatively long evolutionary periods. This, together with the functions carried out by these acquired genes (mostly related to energy metabolism and transport of metabolites across membranes), suggests that HGT has played an important role in the adaptation of these archaea to the cold and nutrient-depleted deep marine environment.     

Can variable pH and low oxygen moderate ocean acidification outcomes for mussel larvae?

Natural variation and changing climate in coastal oceans subject meroplanktonic organisms to broad ranges of pH and oxygen ([O₂]) levels. In controlled‐laboratory experiments we explored the interactive effects of pH, [O₂], and semidiurnal pH fluctuations on the survivorship, development, and size of early life stages of two mytilid mussels, Mytilus californianus and M. galloprovincialis. Survivorship of larvae was unaffected by low pH, low [O₂], or semidiurnal fluctuations for both mytilid species. Low pH (<7.6) resulted in delayed transition from the trochophore to veliger stage, but this effect of low pH was absent when incorporating semidiurnal fluctuations in both species. Also at low pH, larval shells were smaller and had greater variance; this effect was absent when semidiurnal fluctuations of 0.3 units were incorporated at low pH for M. galloprovincialis but not for M. californianus. Low [O₂] in combination with low pH had no effect on larval development and size, indicating that early life stages of mytilid mussels are largely tolerant to a broad range of [O₂] reflective of their environment (80–260 μmol kg^?1). The role of pH variability should be recognized as an important feature in coastal oceans that has the capacity to modulate the effects of ocean acidification on biological responses.     

基于两级分段式算法的卷积神经网络的浮游有孔虫自动鉴定*

有孔虫个体微小、数量众多、地理分布广、演化迅速, 是记录海洋沉积环境的重要载体, 在海相生物地层划分和对比中具有十分重要的作用。因有孔虫属种众多, 传统的属种鉴定需要经验丰富的专业人员进行人工鉴定且耗时较长, 此外人工鉴定古生物面临人才匮乏和工作量大等问题。卷积神经网络在计算机视觉领域的应用可较好的解决上述问题。利用古生物专家对中新世浮游有孔虫化石标注为指导, 根据有孔虫化石不同方向的视角分类, 结合卷积神经网络算法, 开发了有孔虫化石图像识别系统。研究发现, 通过有孔虫化石腹视、缘视和背视角度分类, 采取两级分段式鉴定算法对中新世浮游有孔虫属一级进行识别, 属一级鉴定准确率达到82%左右。